Fiscal year 2025
Articles and publications
1) Nakajima, T., Saito, Y., 2025. Facies variations in gravelly cyclic steps deposited from turbidity currents: Miocene fan delta front deposits compared with modern active fan delta, central Japan. The Depositional Record, 11, 490-510. (2025.04)
2) Sugahara, S., Higa, H., Iwama, M., Nakamura, Y., Inoue, T., Senga, Y., Egawa, M., Seike, Y., 2025. Method for extracting elemental sulfur in environmental water and its application to blue tide samples from Tokyo Bay, Japan. Analytical Sciences, 41, 495-501. (2025.04)
3) Takahara,T., Yamagishi, S., Shimoda, R., Nagata, A., Sakata, K.A., Doi, H., Minamoto, T., 2025. Seven-year changes in eDNA concentrations of two dominant submerged macrophytes in Lake Shinji: Effects of salinity, Estuarine, Coastal and Shelf Science, 315, 109165. (2025.04)
4) Yanay, N., Quade, J., Wang, Z.N., Waseem, M.T., Dettman, D.L., 2025. Alteration of carbonate clumped isotope composition by burial heating in foreland sediments of the Himalaya. Geochimica et Cosmochimica Acta, 394, 15-31. (2025.04)
5) Nguyen-Tran, Y.K., Majiid, A., Mian, R.U., 2025. Data-Driven Spatial Analysis: A Multi-Stage Framework to Enhance Temporary Event Space Attractiveness. World, 6(2), 54. (2025.04)
6) Llopis Monferrer, N., Romac, S., Laget, M., Nakamura, Y., Biard, T., Sandin, M.M., 2025. Is the gelatinous matrix of Nassellaria (Radiolaria) a strategy for coping with oligotrophy? Environmental Microbiology 27(5), e70098. (2025.05)
7) Matsuzaki, K.M., Itaki, T., Kubota, Y., Lee, K.E., Motoyama, I., Sagawa, T., Horikawa, K., Murayama, M., Obata, H., 2025. Review of radiolarian microfossils as a tool for reconstructing sea surface temperature of the past in the Northwest Pacific. Progress in Earth and Planetary Science, 12(1), 35. (2025.05)
8) Higa, M., Naito, K., Sato, T., Tomii, A., Hitsuda, Y., Tahara, M., Ishii, K., Ichisaka, Y., Sugiyama, H., Kobayashi, R., Sakamoto, F., Watanabe, K., Yoshikiyo, K., Shimizu, H., 2025. Hexaraphane Affects the Activation of Hepatic PPARα Signaling: Impact on Plasma Triglyceride Levels and Hepatic Senescence with Aging. Nutrients, 17(11), 1768. (2025.05)
9) Yajima, H., Yoshioka, Y., 2025. Response of interconnected estuarine lakes to sea-level rise and large hydrological structures. Journal of Hydrology: Regional Studies, 59, 102432. (2025.06)
10) Iizuka M., Amano A., Itaki T., 2025. Accurate sampling of undisturbed top sediment from grab sampler collected using aluminum tube and stainless-steel containers for shallow and deep-sea applications, MethodsX, 14, 103213. (2025.06)
11) Ogiso-Tanaka, E., Shimada, D., Ogawa, A., Ishiyama, G., Okumura, K., Hosaka, K., Ishii, C., Nam, K.O., Hoshino, M., Nomura, S., Kakizoe, S., Nakamura, Y., Nishiumi, I., Ito, M.A., Kitayama, T., Tanaka, N., Hosoya, T., Jinbo, U., 2025. DNA Specimen Preservation using DESS and DNA Extraction in Museum. Biology-Basel, 14, 730. (2025.06)
12) Dianto, A., Katsuki, K., Sakai, T., Seto, K., Nakanishi, T., Tanaka, T., Miura, I., Hayashida, A., Irizuki, T., Sampei, Y., Tsujimoto, A., Watanabe, M., Ando, T., Nakamura, Y., Saito, Y., 2025. Holocene coastal evolution and paleogeography of the Izumo Plain and Lake Shinji, Western Japan: incised-valley fills in a wave-dominated estuary environment. Palaeogeography, Palaeoclimatology, Palaeoecology, 670,112941.(2025.07)
13) Tiwari, S., Padate, V.P., Cubelio, S.S., Osawa, M.: Some porcelain crabs (Decapoda: Anomura) from the Andaman Sea, India, with an identification key to Indian porcellanids. Nauplius,33, e20250559. (2025.07)
14) Wang, X.Z., Kurata, K., 2025. Identification and management of ecosystem vulnerability in brackish lakes based on phytoplankton primary productivity dynamics: A case study of lake Nakaumi, Japan. Journal of Ecological Engineering, 26 (9), 60–71. (2025.07)
15) Sasaki, S., Seto, K., Katsuki, K., 2025. Holocene paleoenvironment changes near Lake Funazoko-Ike, East Antarctica, based on analyses of sediments and microfossils. Island Arc, 34(1), e70026 (2925.07)
16) Kajita, H., Kondo, K., Sugiyama, S., Nakamura, Y., Kudoh, S., Umeda, K., 2025. DNA metabarcoding focusing on eukaryote communities on Langhovde Glacier, East Antarctica. Environmental Microbiology Reports, 17(4), e70117. (2025.08)
17) Luo, M., Zheng, M., Wallmann, K., Dale, A.W., Strasser, M., Torres, M.E., Koelling, M., Riedinger, N., Maerz, C., Rasbury, T., Bao, R., Itaki, T., Ikehara, K., Johnson, J.E., Bellanova, P., Nakamura, Y., Yu, M., Xie, J., Chen, D., 2025. Rapid burial and intense degradation of organic matter drive active silicate weathering in the subsurface sediments of the ocean's deepest realm. Geology, 53(8), 636–641. (2025.08)
18) Yamagishi, S., Nakamura, Y., Seto, K., Ando, T., Katsuki, K., Takahara, T., 2025. Reconstruction of paleo-environments by two aquatic plants: eDNA analysis in lake sediment cores. Limnology, 26(3), 417–427. (2025.08)
19) Matsuzaki, Y., Kubota, M., Inoue, T., Mizuguchi, H., 2025. Ecological hydrodynamic modeling and factor analysis of hypoxia dissipation in the semi-enclosed Mikawa Bay, Japan, in August 2020. Marine Pollution Bulletin, 218, 118190. (2025.09)
20) Liu, J., Wang, H., Chen, L., Saito, Y., Chen, B., An, Y., Zhang, J., 2025. Abrupt sea-level rise prior to the 8.2 ka climatic event revealed from the post-glacial sedimentary succession off the northern coast of Shandong Peninsula, North Yellow Sea. Quaternary Science Reviews, 363, 109428. (2025.09)
21) Zalasiewicz, J., Head, M.J., Waters, C.N., Summerhayes, C., Turner, S., Wagreich, M., Aquilina, L., Cearreta, A., Chakraborty, A., Gałuszka, A., Hajdas, I., do Sul, J.I., Leinfelder, R., Magny, M., McCarthy, F.M.G., McNeill, J.R., Park, B.S., Pöschl, U., Renn, J., Robin, L., Saito, Y., Sörlin, S., Thomas, J.A., Trischler, H., Williams, M., Wallenhorst, N., Will, F., 2025. Reply to Edgeworth et al. 2024: The Anthropocene is a time interval, and more besides. Earth’s Future, 13(9), e2024EF005612. (2025.09)
22) Wang, X.Z., Kurata, K., 2025. Seasonal succession of macrozoobenthic communities and environmental biological assessment in Nakaumi Lake, Japan. Journal of Ecological Engineering, 26 (12), 126-135. (2025.10)
23) Fukatsu, Y., Igawa, T., Sasaki, K., Yamagishi, S., Takahara, T., 2025. Genetic Diversity in the Wrinkled Frog, Glandirana rugosa, Evaluated Using Microsatellite Markers Identified by Nanopore Sequencing. Ecological Research, 40(6), e70014. (2025.10)
24) Sugawara, T., Minami, K., Kim S., Inagawa. T., Okitsu, J., Sakamoto, S., Osugi, T., Azuma, N., Zhu,Y., Miyashita, K., 2025. Assessing cyanobacterial spatial distribution in reservoirs using acoustic survey techniques for enhanced water quality management. Current Research in Microbial Sciences, 9, 100477. (2025.10)
25) Ito, T., Kaneko, N., Itaki, T., 2025. Hand-held radiolarian models created using micro-CT and 3D printer. Revue de Micropaleontologie, 89, 100871. (2025.10)
26) Horinouchi, M., Tongnunui, P., Kaeoprakan, P., Hukiew, P., Furumitsu, K., Kon, K., Nakamura, Y., Kanou, K., Yamaguchi, A., Okamoto, K., Sano, M., 2025. Fish assemblage structures in planted seagrass habitats compared with natural seagrass habitats: a field experiment in an intertidal bay in Trang, southern Thailand. Ichthyological Research, (2025 11)
27) Tanaka, K., Amano, A., Itaki, T., Nakayama, K., Takahashi, Y., Suzuki, G., 2025. Distribution and accumulation patterns of tire-derived particles in coastal and lake sediments. Water Research, 286, 124278. (2025.11)
28) Miura, I., Katsuki, K., Nakanishi, T., Seto, K., Saito, Y., 2025. Changes in the Holocene environment in the Lake Shinji, Shimane, western Japan, based on siliceous microfossil analysis. Quaternary International 749, 10994. (2025.11)
29) Ishino, S., Itaki, T., Fukuda, M., 2025. Deep learning object detection for fossil diatom counting: assessing the impact of fossil preservation and intraspecific morphological variation. Marine Micropaleontology, 201, 102519. (2025.12)
30) Nakamura, Y., Hoshino, O., Saito, N., Nagatsuka, S., 2025. New combination of the “Rhizarian rider” phenomenon, Brachyscelus crusculum Bate, 1861 (Crustacea, Amphipoda, Brachyscelidae) and Odontosphaera sp. (Radiolaria, Collodaria, Collosphaeridae). Journal of Eukaryotic Microbiology, 72(6), e70052. (2025.12)
31) Anthony, E., Syvitski, J., Cohen, K.M., Saito, Y., Zăinescu, F., Vespremeanu-Stroe, A., Nicholls, R.J., Marriner, N., Amorosi, A., Maselli, V., Minderhoud, P.S.J., Tamura, T., Day, J., Woodroffe, C.D., Preoteasa, L., Tatui, F., Sabatier, F., Morhange, C., Besset, M., Kemp, P., Chen, Z., 2025. A 7000-year record of human influence on Global River Deltas: Geomorphology, stratigraphy, sediment dynamics, and the Anthropocene overprint and future. Earth-Science Reviews, 271, 105302. (2025.12)
32) Khim, B.K., Kim, W., Hayashi, H., Kuwano, D., Routledge, C.M., Takata, H., Yang, K.H., 2025/2026. Integrated chronostratigraphy of Magellan Seamount KC-7 in the western Pacific Ocean for Late Neogene paleoceanographic studies. Newsletters on Stratigraphy, 58 (4), 397–420. (2025.11)
33) Takata, H., Chun, J.‐H., Cheong, D., Khim, B.‐K., 2025. Holocene millennial‐scale variations of Neogloboquadrina pachyderma (planktonic foraminifera) in the southeast coastal areas of Korea. Paleoceanography and Paleoclimatology, 40, e2025PA005131.(2025.11)
34) Tomii, A., Takei, C., Yoshikiyo, K., Shimizu, H., 2025. The Gut Microbial Metabolite Indole-3-Acetic Acid Reprograms Systemic Homeostasis and Ameliorates IBD-Associated Cachexia Independent of Food Intake. International Journal of Molecular Sciences, 26(23), 11260, (2025.11)
35) Irizuki, T., Suzuki, K., Aoshima, S., Kawano, S., 2025. Fossil ostracod faunas from the Katsuta Group of the Setouchi Geologic Province in southwestern Japan and their paleobiogeography during the mid-Miocene Climatic. Paleontological Research, 29, 253–285. (2025.11)
36) Suganuma, Y., Itaki, T., Haneda, Y., Kusahara, K., Obase, T., Ishiwa, T., Omori, T., Ikehara, M., McKay, R., Seki, O., Hirano, D., Fujii, M., Kato, Y., Amano, A., Tokuda, Y., Iwatani, H., Suzuki, Y., Hirabayashi, M., Matsuzaki, H., Yamagata, T., Iwai, M., Katsuki, K., Jimenez-Espejo, F.J., Matsui, H., Seike, K., Kawamata, M., Nishida, N., Ito, M., Sugiyama, S., Okuno, J., Sawagaki, T., Abe-Ouchi, A., Aoki, S., Miura, H., 2025. Propagating Antarctic ice shelf collapse in Holocene driven by meltwater release. Nature Geosciences, 18, 1216–1223. (2025.12)
37) Hedges, B.A., Beasley-Hall, P.G., Dorey, J.B., Weinstein, P., Austin, A.D., Guzik, M.T., 2025. Environmental DNA reveals temporal and spatial variability of invertebrate communities in arid-lands ephemeral water bodies. Marine and Freshwater Research, 76(18), MF24243.(2025.12)
38) Wu, X., Wang, H., Syvitski, J., Saito, Y., Bi, N., Nittrouer, J., 2026. Reservoir regulation has brought a classic river-dominated delta under human control. Geophysical Research Letters, 53, e2025GL119137. (2026.01)
39) Irizuki, T., Seto, K., Kawakami, R., Shakutsui, H., Narita, M., Yamada, K., Hirose, K., Nishizaki, R., Kawano, S., Nomura, R., 2026. Spatiotemporal controls on meiobenthos (Ostracoda) and environments in a brackish lagoon, Lake Nakaumi (SW Japan) since the Little Ice Age. Regional Studies in Marine Science, 93, 104687. (2026.01)
40) Tiwari, S., Padate, V.P., Osawa, M., Anoop V.S., Wilson S., 2026. Two new deep-sea squat lobsters (Crustacea: Decapoda: Anomura: Munididae) from seamounts of southeastern Arabian Sea, India. Journal of Natural History, 60(1-4), 1-19. (2026.01)
41) Mian, R.U., Nguyen-Tran, Y.K., 2026. AI-Driven Multi-Modal Assessment of Visual Impression in Architectural Event Spaces: A Cross-Cultural Behavioral and Sentiment Analysis. World, 7(2), 21. (2026.01)
42) Shimizu, H., Niwa, T., 2026. Indoxyl Sulfate in the Gut-Kidney Axis: Pathophysiology and Clinical Significance in CKD-Associated Colorectal Cancer. Toxins, 18(2), 72. (2026.01)
43) Ratnayake, A.S., Sampei, Y., Ikehara, M., Dettman, D.L., 2026. Carbon cycle system and origin of organic molecules in subseafloor serpentinized rocks of the Atlantis Massif (Mid-Atlantic ridge, 30°N) oceanic core complex. Deep-Sea Research Part I, 227, 104643. (2026.02)
44) Osawa, M., Sato, T., Komai, T., 2026. New records of Munidopsidae (Decapoda: Anomura) from Japan, with description of a new species of Galacantha A. Milne-Edwards, 1880. Zootaxa, 5760(2), 248–264. (2026.02)
45) Osada, Y., Miya, M., Araki, H., Doi, H., Kasai, A., Masuda, R., Minamoto, T., Seino, S., Takahara, T., Yamamoto, S., Yamanaka, H., Aizu-Hirano, M., Fukaya, K., Fukuchi, T., Gotoh, R.O., Hori, M., Iida, M., Imaizumi, T., Kajita, T., Kanbe, T., Kenta, T., Kobayashi, Y., Matsuura, T., Mizumoto, H., Motomura, H., Murakami, H., Nohara, K., Oka, S.I., Sado, T., Senou, H., Shibukawa, K., Sunobe, T., Takahashi, H., Takayama, K., Tanaka, K., Yamakawa, H., Yokoyama, S., Yoon, S., Kondoh, M., 2026. Large-scale environmental DNA survey reveals niche axes of a regional coastal fish community. Scientific Reports, 16, 3276 (2026.02)
46) Kawahara, H., Koto, Y., Hitsuda, Y., Kurata, K., Yoshikiyo, K., Hashiguchi, A., Maseda, H., Okano, K., Sugiura, N., Shimizu, K., Shimizu, H., 2026. Microcystin-LR Drives Early NAFLD Pathogenesis via Hepatic Cholesterol Accumulation: Dysregulation of Ldlr and Abcg1Expression Uncoupled from Srebp2. Toxins, 18(2), 92. (2026.02)
47) Takei, C., Shimizu, H., 2026. Indole-3-Acetic Acid as a Putative Selective AhR Modulator Counteracts Skatole-Induced Dual-Hit Toxicity in Colorectal Cancer Cells. Toxins, 18(2), 98. (2026.02)
48) Naito, K., Tomii, A., Ishii, K., Shimizu, H., 2026. Indole-3-Acetic Acid and Skatole Exert Opposing Effects on MDR1 Proteostasis in Human Colonic Epithelial Cells: A Molecular Basis for the Gut Microbial Metabolic Switch. Journal of Xenobiotics, 16(1), 36. (2026.02)
49) Qiu, J., Liu, J., Cheng, R., Saito, Y., Li, A., Cao, K., Tian, Y., Chen, B., Xu, Z., Li, M., 2026. Migration of the post-middle Holocene mud depocenter off the Zhejiang coast around 2 ka and its controlling mechanism. Geo-Marine Letters, 46, 8. (2026.03)
50) Ishino, S., Itaki, T., 2026. Slide scanner-based microscopy image datasets of fossil diatoms from Southern Ocean surface sediments. Data in Brief , 64, 112404. (2026.03)
51) Ishiwa, T., Suganuma, Y., Okuno, J., Tokuda, Y., Sasaki, S., Itaki, T., 2026. Re-evaluating Holocene ice-sheet thinning in the Indian Ocean sector of East Antarctica based on sea-level data and glacial isostatic adjustment modelling. Quaternary Science Reviews, 375, 109786. (2026.03)
52) Soma, Y., Yuwa, S., Mian, R.U., 2026. A progressive self-training semi-supervised model to enhance discontinuous change detection. Integration - The VLSI Journal. 107, 102609. (2026.03)